Methods, primers, and kits for detection and speciation of Campylobacter

ABSTRACT

Method for detecing Campylobacter by PCR detection of DNA sequence, highly conserved between species lari, coli, jejuni and upsaliensis. Speciation between these four is possible as the PCR product is differentially cleaved by restriction endonucleases.

CROSS REFERENCE TO RELATED APPLICATION

This application claims priority to International Application PCT/GB94/01967, filed Sep. 9, 1994, which designates the United States of America.

FIELD OF THE INVENTION

This invention relates to the detection and speciation of Campylobacter bacteria, for example in clinical, environmental and food samples. In particular, this invention relates to a method of detecting whether a sample contains Campylobacter and to a method of differentiating between the main Campylobacter species jejuni, coli, upsaliensis and lari.

BACKGROUND OF THE INVENTION

Campylobacter species are recognised as the most frequent cause of bacterial gastroenteritis in the United Kingdom and many other countries throughout the world. In the U.K. approximately 90% and 10% of case isolates are identified as Campylobacter jejuni and Campylobacter coli respectively, plus a small number of other species such as Campylobacter upsaliensis and lari. The majority of the infections are sporadic the source of which remains largely unknown although the importance of several vehicles is now recognised.

There is a known desire to be able to detect and differentiate species of Campylobacter. However, it is also known that present Campylobacter enrichment culture techniques lack sensitivity, making detection difficult. Campylobacter jejuni does not multiply in foodstuffs and low numbers may be present together with a high background of indigenous microflora. Also, surface viable counts of Campylobacter can decrease rapidly and cells that are potentially culturable are often lost before samples reach a laboratory for analysis. Another factor making detection problematic is that antibiotics used in culture enrichment media may damage already weakened Campylobacter.

There are currently available assays for detection of a variety of food and water-borne pathogens; L. pneumophila, V. vulnificus, enteroinvasive E. coli, Shigella; but no satisfactory method of detecting Campylobacter or distinguishing between the four main Campylobacter species is known.

A method of detecting Campylobacter has been published by Giesendorf, B A J, et al in Applied and Environmental Microbiology, December 1992, pages 3804-3808. The method detects the species jejuni, coli and lari, and produces similar results to conventional methods but in a reduced time. The method suffers from a number of drawbacks. It does not enable detection of the species upsaliensis. Further, the method employs polymerase chain reaction (PCR) techniques but nevertheless requires a short enrichment culture before the PCR can be employed. Further still, the primer used for the PCR does not have the precise homology with DNA sequences in the three Campylobacter species that can be detected using the method.

Another method for detecting Campylobacter jejuni and Campylobacter coli is known from Wegmuller, B E et al, Applied Environmental Microbiology, vol. 59, part 7, 1993 pages 2161-2165. The described method detects only the species jejuni and coli.

In addition to the above-identified problems with detection and speciation of Campylobacter, recent work on Campylobacter jejuni suggests that in certain circumstances it enters a "non-culturable, viable form" when subjected to environmental stresses, such as pH or temperature extremes, increased oxygen tension or nutrient depletion. In this form, Campylobacter infectivity is maintained but-the organisms cannot be cultured. Thus there exists a need for the improvement of methods of detection of non-culturable forms of Campylobacter.

SUMMARY OF THE INVENTION

It is an object of this invention to provide a method of testing for the presence of Campylobacter that enables more efficient detection and eliminates or mitigates the problems with existing techniques. It is a further object to provide a method of distinguishing the Campylobacter species jejuni, coli, upsaliensis and lari.

DETAILED DESCRIPTION OF THE INVENTION

Accordingly, in a first aspect the present invention provides a method of testing for the presence of Campylobacter, e.g. in a clinical, environmental or food sample, comprising the steps of performing polymerase chain reaction (PCR) using primers adapted to amplify a region selected from (a) a sequence of at least 72 base pairs from SEQ ID NO:1 and (b) a sequence having sufficient homology with (a) such that formation of PCR product is correlated with presence of Campylobacter; and determining if any PCR product is formed.

It is preferred that sequence (b) has at least 75% homology with (a), preferably at least 90% homology and more preferably at least 95% homology. It is also preferred that the primers are at least 12 nucleotides in length, preferably between 19-22 nucleotides in length. In particularly preferred embodiments of the invention the primers consist of at least 12 contiguous nucleotides selected from (1) SEQ ID NO:2 and SEQ ID NO:3, (2) SEQ ID NO:4 and SEQ ID NO:5 and (3) sequences having sufficient homology with (1) or (2) such that formation of PCR product is correlated with presence of Campylobacter.

PCR has become a well known and established tool for DNA analysis. A single gene sequence can be marketed from a large amount of other DNA and amplified to provide a suitable quantity for analysis. The basis of today's PCR was first published in 1971 be Kleppe, E et al, J. Mol. Biol., 1971, 56, 341. Further significant details and improvements on the PCR method have been added by Saiki, R K et al, Science, 1985, 230, 1350 and Mullis, K B, Sci. Am. 1990, 262, 36.

As will be appreciated by a person of skill in the art familiar with the PCR, it is important to operate at a temperature suitable to ensure that the primers used are specific for the sequence desired to be identified and amplified. To this end it is convenient to carry out the PCR reaction using the method of the invention at temperatures of at least 40° C. preferably at least 45° C. and in a particularly preferred embodiment at 48°-52° C.

The 1.9 kilobase fragment identified in SEQ ID NO:1 is an underlying feature of this invention and has been found to be highly conserved between Campylobacter isolates. The method of the invention confers the advantage that PCR product will only be detected when a Campylobacter strain is found in the sample tested. The method also confers the advantage that it will detect non-culturable viable forms of Campylobacter as well as viable cells. Thus the method is effective where other methods have not been able to detect any Campylobacter.

It is preferable to use a primer sequence that will only bind to one specific region of SEQ ID NO:1 and which will not engage in formation of primer dimers and thus contaminate the PCR. Examples of preferred primers for use in the method of the invention are shown in the SEQ ID NOs:2 and 3 and SEQ ID NOs:4 and 5. These primers form further aspects of the invention.

In a second aspect the invention provides a method of distinguishing between Campylobacter species jejuni, coli, upsaliensis and lari in a DNA containing sample by performing PCR utilizing primers capable of amplifying a selected Campylobacter DNA sequence, said sequence having restriction endonuclease sites specifically associated with different Campylobacter species and then testing for digestion of the PCR product by the specific restriction endonucleases.

Thus, Campylobacter DNA that is differentially cleared by restriction endonucleases is amplified, subject to digestion by the endonucleases and identified as from a particular species.

SEQ ID NO:1 was isolated from Campylobacter jejuni and is known to have a particular characteristic pattern of cleavage by restriction endonucleases. Campylobacter coli, upsaliensis and lari contain sequences corresponding to SEQ ID NO:1 that have altered patterns of cleavage characteristic of each species.

In an embodiment of the second aspect there is provided a method of distinguishing between Campylobacter species jejuni, coli, upsaliensis and lari, e.g. in a clinical, environmental or food sample containing Campylobacter, comprising the steps of:

performing polymerase chain reaction (PCR) on the sample using primers adapted to amplify a region of DNA SEQ ID NO:1 that includes nucleotides 124-196, or using primers adapted to amplify a DNA region corresponding thereto; and

testing the PCR product for digestion by restriction endonucleases Alu I, Dra I and Dde I.

The method of the second aspect is advantageous because it enables accurate speciation between the four clinically most significant species. In particular, when amplifying region 124-196 of SEQ ID NO:1, the PCR product from Campylobacter jejuni is cleaved by all three restriction endonucleases, whereas the PCR product from species coli is not cleaved by Dra I, the PCR product from species upsaliensis is only cleaved by Dde I and PCR product from lari is only cleaved by Alu I. It is a straightforward matter for a person skilled in the art to identify whether the PCR product is cleaved by one or more of the above endonucleases and thus the method enables simple speciation of Campylobacter into jejuni, coli, upsaliensis or lari.

The embodiments of the first aspect of the invention described above form embodiments of the second aspect of the invention also, provided that primers are selected so as to be adapted to amplify at least nucleotides 124-196 of SEQ ID NO:1, or a Campylobacter sequence corresponding thereto.

In a preferred embodiment of the second aspect the primers consist of at least 12 contiguous nucleotides from SEQ ID NOs: 4 and 5. Where the primers are SEQ ID NOs: 4 and 5 the PCR product is 256 bp and the respective products of cleavage by Alu I, Dra I and Dde I differentiate between jejuni, coli, upsaliensis and lari.

In a further embodiment of the invention, increased sensitivity and specificity for the detection of the presence of Campylobacter DNA, e.g. in food and liquid samples, is provided by the following additional methodologies:

1. A nested PCR has been developed, and is performed by an additional round of amplification using primer sequences international primer SEQ ID NOs:4 and 5. Two exemplary primer sequences are identified as Cru 0476 (SEQ ID NO:6) and Cru 0474 (SEQ ID NO:7). Following the second round of amplification, an amplicon of approximately 173 pb is obtained in the presence of Campylobacter DNA. This DNA fragment retains the sequences for the restriction endonucleases Alu 1, Dde 1, and Dra 1, thus still enabling the speciation of the contaminating Campylobacter.

2. Additional increased sensitivity and specificity is optionally achieved by southern transfer of the amplified PCR products obtained using oligonucleotide primers having SEQ ID NOs:4 and 5, followed by hybridisation with an internal probe (e.g. SEQ ID NO:8 probe sequence). The probe sequence spans the restriction sites for speciation of the contaminating Campylobacter and therefore restriction digest analysis can be used in conjunction with the probe hybridisation to confer additional specificity. The probe can be labelled, for example with digoxigenin, or radiolabelled.

The extraction procedures for food and environmental samples preferably use an internal standard to enable qualitative estimation of extraction efficiency and the effects of non-specific inhibition. The PCR "MIMIC" (Clontech Laboratories, Palo Alto, Calif.) is a form of competitive PCR in which a non-homologous neutral DNA fragment is engineered containing the same primer templates as the target DNA. The amplimer produced from this construct is a fragment either smaller or larger than the target product. Known amounts of construct are added to the PCR reaction, and compete for the same primers, acting as an internal standard. Where a mimic is used, the mimic sequence is capable of being amplified by the same primers that amplify, under PCR conditions, the Campylobacter sequence. The mimic, if cleaved by restriction endonucleases, does not form fragments that interfere with detection and/or speciation of Campylobacter-the mimic is said to be "neutral".

It is preferred to carry out the PCR steps of the invention also using a mimic. In an example, mimic DNA is added to the sample and PCR is performed according to the invention. The PCR product is analyzed. If mimic DNA has been amplified, this indicates that the PCR reaction has occurred properly. The product can then be tested for products that indicate presence of Campylobacter. If no mimic DNA is amplified then this indicates PCR has not fully been carried out, or has been inhibited in some way.

It is further preferred to carry out PCR using mimic DNA of known and varying quantities. After amplification, the various results are compared and it is observed which of the results has comparable amounts of amplified mimic and (if present) Campylobacter DNA. Thus, an estimate of the quantity of Campylobacter DNA in the original sample is obtained.

EXAMPLES

The methods of the invention are further illustrated by the further embodiments of the invention described in the following Examples:

Example 1

The PCR assay was developed by the following steps:

1> Identification of a highly conserved, species specific clone from a random library of Campylobacter jejuni insert fragments, cloned in the vector pBlueScript KS.

2> Chain termination sequencing of the 1.9 kilobase fragment in both directions.

3> Selection of presumptive primer pairs based on regions of equivalent G+C/A+T content, and low identity (prevention of `primer-dimer`).

4> Optimisation of reaction parameters: Mg⁺⁺ concentration, Taq enzyme source, buffer composition, annealing temperature, cycling parameters.

Example 2

ASSESSMENT OF ASSAY SENSITIVITY AND SPECIFICITY

Using a single amplification (35 cycles, annealing temperature 50° C.) we detected approx. 10 CFU/ml of Campylobacter jejuni.

At this stringency, the assay was specific for Campylobacter jejuni, Campylobacter coli and Campylobacter upsaliensis. Using a lower annealing temperature (42° C.), Campylobacter fetus and Campylobacter lari were also amplified.

Example 3

The following procedures were used for PCR amplification of Campylobacter jejuni from milk and water samples.

1> cell lysis by boiling or freeze/thaw cycles, centrifuge, PCR supernatant directly.

2> Cell lysis by boiling, nucleic acid purification by phenol\chloroform extraction

3> cell lysis by guanidine isothiocyanate, nucleic acid purification using nuclease binding matrix ("isoquick").

4> Cell concentration using magnetic particles coated with anti-Campylobacter IgG, cell lysis by boiling.

5> concentration and immobilisation of cells on 0.2 μm nitrocellulose filters (`solid-phase` PCR).

6> Cell-concentration using affinity column purification

7> guanidinium isothiocyanate nucleic acid extraction, with purification using silica bead matrix (`boom method`)

    ______________________________________                                         EXTRACTION OF MILK SAMPLES                                                      FOR PCR ANALYSIS                                                               WARM MILK TO 37° C.                                                     ↓                                                                       CENTRIFUGE @ 3,000xg, 15 MINUTES                                               ↓                                                                       CHILL ON ICE SEPARATE MILK AND CREAM                                            CREAM                 MILK                                                                            EMULSIFY IN 10 VOLUMES                                  WARM PBS                                                                       ↓ ↓                                                              CENTRIFUGE @ 9,000xg, 15 MINUTES                                               DISCARD SUPERNATANT DISCARD SUPERNATANT                                      RESUSPEND MILK AND CREAM PELLETS IN                                              5 VOLUMES OF PBS. POOL EXTRACTS.                                               ↓                                                                       BOIL FOR 10 MINUTES                                                            ↓                                                                       CENTRIFUGE @ 14,000xg, 5 MINUTES                                               ↓                                                                       EXTRACT DNA WITH SILICA-BASED PURIFICATION MATRIX                              ↓                                                                       ELUTE NUCLEIC ACIDS WITH 2 × 50 μl PURE WATER                         ↓                                                                       PCR NEAT SAMPLE, AND 10-FOLD SERIAL DILUTIONS                                  EXTRACTION OF WATER SAMPLES                                                    PRE-FILTRATION THROUGH 30 μm in WHATMAN FILTER                              ↓                                                                       CENTRIFUGE @ 9,000xg, 15 MINUTES                                               ↓                                                                       WASH PELLET x2, 1 ML PBS                                                       ↓                                                                       RESUSPEND IN 1 ML STERILE WATER                                                ↓                                                                       BOIL, 10 MINUTES                                                               ↓                                                                       EXTRACT DNA WITH SILICA-BASED                                                  PURIFICATION MATRIX                                                          ______________________________________                                    

Example 4

We observed the following differentiation of Campylobacter species using PCR primers SEQ ID NO:4 and SEQ ID NO:5 and restriction endonucleases Alu I, Dra I and Dde I.

    ______________________________________                                                     PCR product digested with:                                         Species     Alu I        Dra I  Dde I                                          ______________________________________                                         C. jejuni   +            +      +                                                C. coli + - +                                                                  C. upsaliensis - - +                                                           C. lari + - -                                                                ______________________________________                                    

We further observed the following fragment sizes for different species.

    ______________________________________                                                    Restriction enzyme digests of PCR amplimers                         Species    Alu I      Dde I       Dra I                                        Thermophilic/    Fragment     Fragment    Fragment                               enteropathogenic  sizes (bp)  sizes (bp)  sizes (bp)                         ______________________________________                                         C. jejuni  2     108, 148 2   83, 173 2   123, 133                               C. jejuni 2 108, 148 2 83, 173 2 123, 133                                      (hippurate + ve)                                                               C. coli 2 108, 148 2 83, 173 1 256                                             C. lari 2 108, 148 1 256 1 256                                                 C. upsaliensis 1 256 3 30, 83, 143 1 256                                     ______________________________________                                    

The results are also illustrated in FIG. 3 where bands were not visible by eye they were detected by use of radiolabels.

Example 5

To test the specificity of Campylobacter detection we used PCR primers on laboratory samples containing a wide range of organisms. The primers were SEQ ID NOs: 4 and 5, PCR product size in brackets:

    ______________________________________                                                        Annealing temperature of primers                                Species        37° C.                                                                            42° C.                                                                          50° C.                                 ______________________________________                                         C. jejuni      +         +       +                                                (256)                                                                         C. coli + + +                                                                  C. upsaliensis + + +                                                           C. fetus + ± -                                                              C. lari + ± -                                                               C. mucosalis ± - -                                                          C. sputorum ± - -                                                           Achromobacter sp. - - -                                                        Acinetobacter ± - -                                                         calcoac. (multiple)                                                            Acinetobacter sp. ± - -                                                      (multiple)                                                                    Aeromonas - - -                                                                hydrophila                                                                     Citrobacter - - -                                                              freundii                                                                       Enterobact. - - -                                                              aerogenes                                                                      Enterobact. ± - -                                                           agglomerans (500)                                                              Enterobacter - - -                                                             cloacae                                                                        Escherichia coli - - -                                                         Flavobacterium - - -                                                           Klebsiella - - -                                                               aerogenes                                                                      Klebsiella oxytoca ± - -                                                     (500)                                                                         Proteus mirabilis - - -                                                        Proteus morganii - - -                                                         Providencia - - -                                                              stuartii                                                                       Pseudomonas - - -                                                              aeroginosa                                                                     Pseudomonas - - -                                                              maltophilia                                                                    Pseudomonas - - -                                                              pickettii                                                                      Salmonella - - -                                                               enteritidis                                                                    Salmonella - - -                                                               typhimurium                                                                    Serratia - - -                                                                 marcescens                                                                     Serratia - - -                                                                 liquefaciens                                                                   Shigella - - -                                                                 dysenteriae                                                                    Shigella sonnei - - -                                                          Vibrio cholera - - -                                                           Vibrio furnassii ± - -                                                       (1000)                                                                        Vibrio ± ± -                                                             parahaemolyticus (180)                                                         Yersinia - - -                                                                 enterocolitica                                                                 Oxford ± ± -                                                             Staphlococcus (300)                                                          ______________________________________                                    

Example 6

Using standard culture techniques (published by Bolton F J. et al, J. Appl. Bacteriol., 1983, vol. 54, pages 115-125) we compared the detection of Campylobacter jejuni by culture with detection by the method of the invention (using primers SEQ ID NOs: 4 and 5) against time.

The success of culture detection declined over the time of the comparison, no culturable organisms being found remaining in the sample after 26 days--thus at this point detection by culture indicated no Campylobacter present.

By contrast, using the PCR method of the invention we were still able to detect Campylobacter DNA in a sample 42 days old. The results are illustrated in FIG. 1.

Example 7

To confirm the accuracy of the PCR method of the invention we tested many samples that contained known species of Campylobacter. The results, illustrated in FIGS. 4-11, confirm the method is completely accurate for all samples tested, and correctly identified each one by species.

FEATURES OF THE PCR ASSAY FOR Campylobacter jejuni

It allows rapid and sensitive detection of Campylobacter jejuni from environmental samples,

provides a semi-quantitative indication of the bacterial load, and determines whether samples are contaminated with Campylobacter jejuni, coli, upsaliensis or lari.

The method is of use for examining epidemiology of Campylobacter infection such as a) seasonal peak, b) inverse correlation of surface water viable counts with human disease, c) role of water supply in (re)infection of broiler flocks with Campylobacter jejuni, d) contamination of foodstuffs at the point of sale, and e) determine origin of sporadic human infections.

Thus, a novel method incorporating polymerase chain reaction assay has been developed for the detection of Campylobacter in clinical, environmental and food samples, such as milk and water samples. The assay is rapid, highly sensitive, and specific for Campylobacter sp. Simple restriction analysis of the PCR product allows speciation between Campylobacter jejuni, coli, upsaliensis and lari.

DESCRIPTION OF DRAWINGS

FIG. 1 shows a comparison of culturability of Campylobacter jejuni against time with detection of Campylobacter jejuni using PCR of the invention;

FIG. 2 shows the sequence (SEQ ID NOs: 12, 14-19) of open reading frame "C" from insert fragment pBSKSCJ19B with primer/nested primer locations, and restriction sites;

FIG. 3 shows restriction enzyme analysis of PCR products amplified from C. jejuni, coli and upsaliensis.

FIGS. 4-11 shows the results of carrying out the PCR method of the invention on samples containing a wide ranges of known isolates. "P"=Penner Serotype Reference strains. "L"=Lior Serotype Reference Strains. Others are laboratory isolates. Standard size markers are on the gel ends.

    ______________________________________                                         FIG. 4      C. Jejuni.   Alu I digest.                                           FIG. 5 C. Jejuni. Dde I digest.                                                FIG. 6 C. Jejuni. Dra I digest.                                                FIG. 7 C. upsaliensis. Alu I and Dde I digest.                                 FIG. 8 C. upsaliensis. Dra I digest.                                           FIG. 9 C. Coli. Alu I digest                                                   FIG. 10 C. Coli. Dde I digest                                                  FIG. 11. C. Coli. Dra I digest                                               ______________________________________                                    

    Sequence ID No. 1                                                              1  accaacagcc attaaaaatc ttgactcagc catactcact ttaagaacac                          tggttgtcgg taatttttag aactgagtcg gtatgagtga aattcttgtg                        - 51 gcggacctat ataataccgt tgcccaaatc cctgaaagca taaaaccaaa                     cgcctggata tattatggca acgggtttag ggactttcgt attttggttt                        - 101 attcacacct gaagtatgaa gtggtctaag tcttgaaaaa gtggcatatt                    ttagtctgga cttcatactt caccagattc agaacttttt caccgtataa                        - 151 gtcctggtaa ataatttaaa ttaggatatg ccatttgaaa agctataaga                    caggaccatt tattaaattt aatcctatac ggtaaacttt tcgatattct                        - 201 gttcctatag ccataccaac aatgccaaac aatatggtcg caaacataaa                    caaggatatc ggtatggttg ttacggtttg ttataccagc gtttgtattt                        - 251 atatcttgca accgtatagt cgtaatttaa tacattacct ggatgcatcg                    tatagaacgt tggcatatca gcattaaatt atgtaatgga cctacgtagc                        - 301 actttctcct taaaattttt gataacaaga gaagattata gaatattaat                    tgaaagagga attttaaaaa ctattgttct cttctaatat cttataatta                        - 351 tatacatttt ttcttaaaaa tgat/aatttt gttaatcatt tgttatgttt                   atatgtaaaa aagaattttt acta ttaaaa caattagtaa acaatacaaa                       - 401 tatattttaa ggctaaatca gtcttattta ttgatattta tcttataacc                    atataaaatt ccgatttagt cagaataaat aactataaat agaatattgg                        - 451 taaacttgtc acatttttta taaaatcttc acccacttta tctcttactc                    atttgaacag tgtaaaaaat attttagaag tgggttgaaat agagaatgag                       - 501 tttttataaa agttcta{aca gcagtatcgc tcacatgt}c acctatccaa                   aaaaatattt tcaagat tgt cgtcatagcg agtgtaca g tggataggtt                       - 551 acatttttct taatatcttc atgcaaaacc aaagctccag gttgctttaa                    tgtaaaaaga attatagaag tacgttttgg tttcgaggtc caacgaaatt                        - 601 aagcaaagaa ataaaagcca attctttttt agttaaaaca atttctccac                    ttcgtttctt tattttcggt taagaaaaaa tcaattttgt taaagaggtg                        - 651 cactgtaaat taaagttcgt ttatttttgt taaattgata ttcttcagaa                    gtgacattta atttcaagca aataaaaaca atttaactat aagaagtctt                        - 701 atttttacaa gcatatttgc ttcaattttt tcacctatca gataatctaa                    taaaaatgtt cgtataaacg aagttaaaaa agtggatagt ctattagatt                        - 751 aactttaaac aactcttcta tatcaacagg tttaatcaaa tatttatcta                    ttgaaatttg ttgagaagat atagttgtcc aaattagttt ataaatagat                        - 801 taccaatatc aatagaacgc aaaagtctct ctt tctctga atacgcacta                  atggttatag ttatcttgcg ttttcagaga gaa{agagact tatgcgtgat                        - 851 aga acaacaa ttgggacatc atctgaaatt tctttaatct ctcttgccat                  tct tgttgaa aaccctgtag tagactttaa agaaattaga gagaacggta                        - 901 atccagtcca tccataatag gcatagcaat atctgtgata actaaatctg                    taggtcaggt aggtattatc cgtatcgtta tagacactat tgatttagac                        - 951 gcttaaattt tttaaatttt ttaagcccct catctccatt ttgagctccg                    cgaatttaaa aaatttaaaa aattcggggt gtagaggtaa aactcgaggc                        - 1001 attactttac taaagcgttc gcttaatata ttaatcattg attctctagc                   taatgaaatg atttcgcaag cgaattatat aattagtaac taagagatcg                        - 1051 cttaacctca tcttcaacta ctaatattat taattcttta cattcttgtg                   gaattggagt agaagttgat gattataata attaagaaat gtaagaacac                        - 1101 acat/ttctac tctaccctct cttttagttt taaaaatatc tcaaaacaag                   tgta aagatg agatgggaga gaaaatcaaa atttttatag agttttgttc                      - 1151 ccccgtcttt tccattttta acttttattt ttccttggaa actttcgata                   ggggcagaaa aggtaaaaat tgaaaataaa aaggaacctt tgaaagctat                        - 1201 atttgtctac ttatataaag tcctactcct ataccttgac taggatgttt                   taaacagatg aatatatttc aggatgagga tatggaactg atcctacaaa                        - 1251 tgttgtaaaa taaggttgaa aaattttatc taaattttct ttatcaatcc                   acaacatttt attccaactt tttaaaatag atttaaaaga aatagttagg                        - 1301 caccagcatt atcttttatt gtaattttca gataattttt tccaaatttt                   gtggtcgtaa tagaaaataa cattaaaagt ctattaaaaa aggtttaaaa                        - 1351 gaaaaattta ttgttatgat tttccttttt ttgtttttaa atgcttctat                   ctttttaaat aacaatacta aaaggaaaaa aacaaaaatt tacgaagata                        - 1401 tgaatttaaa atcaaattaa gaaaaactct tattaaacca ttctcatatg                   acttaaattt tagtttaatt ctttttgaga ataatttggt aagagtatac                        - 1451 ccaaaacttc ataatcactt ttcgaaacaa tattaatatt tacatgattt                   ggttttgaag tattagtgaa aagctttgtt ataattataa atgtactaaa                        - 1501 ttttctatag tttcaaaagc aatttccaag gctttattta aagtctcttt                   aaaagatatc aaagttttcg ttaaaggttc cgaaataaat ttcagagaaa                        - 1551 tataaataca cactgctcta ctcctttgtt aaacaaagtt ctaaacacat                  - 1601 caattgtttc tgacatattt ttaatcatat cttttgattg tgagtaaatt                   gttaacaaag actgtataaa aattagtata gaaaactaac actcatttaa                        - 1651 tcagcaaatc ctttttcatc tttaagattt tgcttcattt gaaacatggc                   agacgtttag gaaaaagtag aaattctaaa acgaagtaaa ctttgtaccg                        - 1701 aataccgagc tcatttaacg gttgtctcca ttgatgtgct atatcactaa                   ttatggctcg agtaaattgc caacagaggt aactacacga tatagtgatt                        - 1751 tcatttgttc taatgaagat ttcaaaatct cttcatatgc tattttaata                   agtaaacaag attacttcta aagttttaga gaagtatacg ataaaattat                        - 1801 tctttttcat ttttttccaa ggcaatttgc atttttttct caaatttttt                   agaaaaagta aaaaaaggtt ccgttaaacg taaaaaaaga gtttaaaaaa                        - 1851 acctaactgt ataaattctt ggtggtgatt tttaactgta ttttcaagat                   tggattgaca tatttaagaa caaccactaa aaattgacat aaaagaacta                        - 1901 taatacttaa ttctcttaat ttagcgtgat ttagagcaag ctcttcat                    attatgaatt aagagaatta aatcgcacta aatctcgttc gagaagta                          Sequence ID No. 2                                                              5' TCTTAGTGCG TATTCAGAGA 3'                                                     - Sequence ID No. 3                                                           5' ACAGCAGTAT CGCTCACATG T 3'                                                   - Sequence ID No. 4                                                           5' AGAACACGCG GACCTATATA 3'                                                    (also referred to as B04263)                                                    - Sequence ID No. 5                                                           5' CGATGCATCC AGGTAATGTA T 3'                                                  (also referred to as B04264)                                                   Primer Sequences                                                                   Internal                                                                   Cru 0476 (SEQ ID NO: 6)                                                        5' a t c a c a c c t g a a g t a t g a 3' 18 mer                                - Cru 0474 (SEQ ID NO: 7)                                                     5' t a c g a c t a t a c g g t t g c a 3' 18 mer                                - Amplimer size: 173 base pairs                                        

    __________________________________________________________________________     SEQ ID NO: 8                                                                     Probe sequence (173 bp amplimer from nested primers)                            -                                                                             #STR1##                                                                         -       accatattgtttggcattgttggtatggct                                      --------+---------+---------+1740                                                      tggtataacaaaccgtaacaaccataccga                                                 T  I  L  F  G  I  V  G  M  A  -                                           -                    Alu I                                                          ataggaactcttatagcttttcaaatggca                                             1741---------+---------+---------+-       tatccttgagaatatcgaaaagtttacc     gt                                                                                    I  G  T  L  I  A  F  Q  M  A  -                                           -                Dra I                                                              tatcctaatttaaattatttaccaggacaa                                          --------+---------+---------+1800                                                     ataggattaaatttaataaatggtcctgtt                                                 Y  P  N  L  N  Y  L  P  G  Q  -                                           -                                                                              #STR2##                                                                        -                                                                             PCR MIMIC primers and sequence                                                  -                                                                             Primer 1  Cru 0477  (SEQ ID NO: 9)                                             5'        agaacacgcggacctatatacgcaagtgaaatctcctccg   3'   40 mer                - Primer 2  Cru 0660  (SEQ ID NO: 10) - 5'        cgatgcatccaggtaatgtatt     ctgtcaatgcagtttgtag   3'   41mer                                                 - MIMIC SEQUENCE      (SEQ ID NO: 11)                                          - 5'        agaacacgcg gacctatata cgcaagtgaa atctcctccg                                 tcttggagaa gggagagcgt ttgccccagc taccattgat                                    gtgtacatga tcatggtcaa atgctggatg attgatgcag                                    acagccgtcc caagtttcgt gagctgattg cagagttctc                                    caaaatggct cgtgaccctc cccgctatct tgttatacag                                    ggagatgaaa ggatgcactt gcctagccct acagattcca                                    agttttatcg caccctgatg gaggaggagg acatggaaga                                    cattgtggat gcagatgagt atcttgtccc acaccagggc                                    tttttcaaca tgccctctac atctcggact ctacaaactg                                    gttcattgag cgctactagc aacaattctg ctacaaactg                                    cattgacaga      3'                                                  __________________________________________________________________________

    __________________________________________________________________________     #             SEQUENCE LISTING                                                   - -  - - (1) GENERAL INFORMATION:                                              - -    (iii) NUMBER OF SEQUENCES: 19                                           - -  - - (2) INFORMATION FOR SEQ ID NO:1:                                      - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 1947 base - #pairs                                                 (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Campylobacte - #r coli                                  - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #1:                            - - ACCAACAGCC ATTAAAAATC TTGACTCAGC CATACTCACT TTAAGAACAC GC -              #GGACCTAT     60                                                                  - - ATAATACCGT TGCCCAAATC CCTGAAAGCA TAAAACCAAA AATCACACCT GA -             #AGTATGAA    120                                                                  - - GTGGTCTAAG TCTTGAAAAA GTGGCATATT GTCCTGGTAA ATAATTTAAA TT -             #AGGATATG    180                                                                  - - CCATTTGAAA AGCTATAAGA GTTCCTATAG CCATACCAAC AATGCCAAAC AA -             #TATGGTCG    240                                                                  - - CAAACATAAA ATATCTTGCA ACCGTATAGT CGTAATTTAA TACATTACCT GG -             #ATGCATCG    300                                                                  - - ACTTTCTCCT TAAAATTTTT GATAACAAGA GAAGATTATA GAATATTAAT TA -             #TACATTTT    360                                                                  - - TTCTTAAAAA TGATAATTTT GTTAATCATT TGTTATGTTT TATATTTTAA GG -             #CTAAATCA    420                                                                  - - GTCTTATTTA TTGATATTTA TCTTATAACC TAAACTTGTC ACATTTTTTA TA -             #AAATCTTC    480                                                                  - - ACCCACTTTA TCTCTTACTC TTTTTATAAA AGTTCTAACA GCAGTATCGC TC -             #ACATGTCA    540                                                                  - - CCTATCCAAA CATTTTTCTT AATATCTTCA TGCAAAACCA AAGCTCCAGG TT -             #GCTTTAAA    600                                                                  - - AGCAAAGAAA TAAAAGCCAA TTCTTTTTTA GTTAAAACAA TTTCTCCACC AC -             #TGTAAATT    660                                                                  - - AAAGTTCGTT TATTTTTGTT AAATTGATAT TCTTCAGAAA TTTTTACAAG CA -             #TATTTGCT    720                                                                  - - TCAATTTTTT CACCTATCAG ATAATCTAAA ACTTTAAACA ACTCTTCTAT AT -             #CAACAGGT    780                                                                  - - TTAATCAAAT ATTTATCTAT ACCAATATCA ATAGAACGCA AAAGTCTCTC TT -             #TCTCTGAA    840                                                                  - - TACGCACTAA GAACAACAAT TGGGACATCA TCTGAAATTT CTTTAATCTC TC -             #TTGCCATA    900                                                                  - - TCCAGTCCAT CCATAATAGG CATAGCAATA TCTGTGATAA CTAAATCTGG CT -             #TAAATTTT    960                                                                  - - TTAAATTTTT TAAGCCCCTC ATCTCCATTT TGAGCTCCGA TTACTTTACT AA -             #AGCGTTCG   1020                                                                  - - CTTAATATAT TAATCATTGA TTCTCTAGCC TTAACCTCAT CTTCAACTAC TA -             #ATATTATT   1080                                                                  - - AATTCTTTAC ATTCTTGTGA CATTTCTACT CTACCCTCTC TTTTAGTTTT AA -             #AAATATCT   1140                                                                  - - CAAAACAAGC CCCGTCTTTT CCATTTTTAA CTTTTATTTT TCCTTGGAAA CT -             #TTCGATAA   1200                                                                  - - TTTGTCTACT TATATAAAGT CCTACTCCTA TACCTTGACT AGGATGTTTT GT -             #TGTAAAAT   1260                                                                  - - AAGGTTGAAA AATTTTATCT AAATTTTCTT TATCAATCCC ACCAGCATTA TC -             #TTTTATTG   1320                                                                  - - TAATTTTCAG ATAATTTTTT CCAAATTTTG AAAAATTTAT TGTTATGATT TT -             #CCTTTTTT   1380                                                                  - - TGTTTTTAAA TGCTTCTATT GAATTTAAAA TCAAATTAAG AAAAACTCTT AT -             #TAAACCAT   1440                                                                  - - TCTCATATGC CAAAACTTCA TAATCACTTT TCGAAACAAT ATTAATATTT AC -             #ATGATTTT   1500                                                                  - - TTTCTATAGT TTCAAAAGCA ATTTCCAAGG CTTTATTTAA AGTCTCTTTT AT -             #AAATACAC   1560                                                                  - - ACTGCTCTAC TCCTTTGTTA AACAAAGTTC TAAACACATC AATTGTTTCT GA -             #CATATTTT   1620                                                                  - - TAATCATATC TTTTGATTGT GAGTAAATTT CAGCAAATCC TTTTTCATCT TT -             #AAGATTTT   1680                                                                  - - GCTTCATTTG AAACATGGCA ATACCGAGCT CATTTAACGG TTGTCTCCAT TG -             #ATGTGCTA   1740                                                                  - - TATCACTAAT CATTTGTTCT AATGAAGATT TCAAAATCTC TTCATATGCT AT -             #TTTAATAT   1800                                                                  - - CTTTTTCATT TTTTTCCAAG GCAATTTGCA TTTTTTTCTC AAATTTTTTA CC -             #TAACTGTA   1860                                                                  - - TAAATTCTTG TTGGTGATTT TTAACTGTAT TTTCAAGATT AATACTTAAT TC -             #TCTTAATT   1920                                                                  - - TAGCGTGATT TAGAGCAAGC TCTTCAT          - #                  - #                1947                                                                      - -  - - (2) INFORMATION FOR SEQ ID NO: 2:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 20 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #2:                            - - TCTTAGTGCG TATTCAGAGA            - #                  - #                       - # 20                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 3:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 21 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #3:                            - - ACAGCAGTAT CGCTCACATG T           - #                  - #                       - #21                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 4:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 20 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #4:                            - - AGAACACGCG GACCTATATA            - #                  - #                       - # 20                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 5:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 21 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #5:                            - - CGATGCATCC AGGTAATGTA T           - #                  - #                       - #21                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 6:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 18 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #6:                            - - ATCACACCTG AAGTATGA             - #                  - #                       - #  18                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 7:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 18 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #7:                            - - TACGACTATA CGGTTGCA             - #                  - #                       - #  18                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 8:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 173 base - #pairs                                                  (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #8:                            - - TACGACTATA CGGTTGCAAG ATATTTTATG TTTGCGACCA TATTGTTTGG CA -              #TTGTTGGT     60                                                                  - - ATGGCTATAG GAACTCTTAT AGCTTTTCAA ATGGCATATC CTAATTTAAA TT -             #ATTTACCA    120                                                                  - - GGACAATATG CCACTTTTTC AAGACTTAGA CCACTTCATA CTTCAGGTGT GA - #T                173                                                                        - -  - - (2) INFORMATION FOR SEQ ID NO: 9:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 40 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #9:                            - - AGAACACGCG GACCTATATA CGCAAGTGAA ATCTCCTCCG     - #                       - #    40                                                                       - -  - - (2) INFORMATION FOR SEQ ID NO: 10:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 41 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #10:                           - - CGATGCATCC AGGTAATGTA TTCTGTCAAT GCAGTTTGTA G    - #                       - #   41                                                                       - -  - - (2) INFORMATION FOR SEQ ID NO: 11:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 410 base - #pairs                                                  (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #11:                           - - AGAACACGCG GACCTATATA CGCAAGTGAA ATCTCCTCCG TCTTGGAGAA GG -              #GAGAGCGT     60                                                                  - - TTGCCCCAGC TACCATTGAT GTGTACATGA TCATGGTCAA ATGCTGGATG AT -             #TGATGCAG    120                                                                  - - ACAGCCGTCC CAAGTTTCGT GAGCTGATTG CAGAGTTCTC CAAAATGGCT CG -             #TGACCCTC    180                                                                  - - CCCGCTATCT TGTTATACAG GGAGATGAAA GGATGCACTT GCCTAGCCCT AC -             #AGATTCCA    240                                                                  - - AGTTTTATCG CACCCTGATG GAGGAGGAGG ACATGGAAGA CATTGTGGAT GC -             #AGATGAGT    300                                                                  - - ATCTTGTCCC ACACCAGGGC TTTTTCAACA TGCCCTCTAC ATCTCGGACT CC -             #TCTTCTGA    360                                                                  - - GTTCATTGAG CGCTACTAGC AACAATTCTG CTACAAACTG CATTGACAGA  - #                  410                                                                         - -  - - (2) INFORMATION FOR SEQ ID NO: 12:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 388 base - #pairs                                                  (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #12:                           - - TGATTAACAA AATTATCATT TTTAAGAAAA AATGTATAAT TAATATTCTA TA -              #ATCTTCTC     60                                                                  - - TTGTTATCAA AAATTTTAAG GAGAAAGTCG ATGCATCCAG GTAATGTATT AA -             #ATTACGAC    120                                                                  - - TATACGGTTG CAAGATATTT TATGTTTGCG ACCATATTGT TTGGCATTGT TG -             #GTATGGCT    180                                                                  - - ATAGGAACTC TTATAGCTTT TCAAATGGCA TATCCTAATT TAAATTATTT AC -             #CAGGACAA    240                                                                  - - TATGCCACTT TTTCAAGACT TAGACCACTT CATACTTCAG GTGTGATTTT TG -             #GTTTTATG    300                                                                  - - CTTTCAGGGA TTTGGGCAAC GGTATTATAT AGGTCCGCGT GTTCTTAAAG TG -             #AGTATGGC    360                                                                  - - TGAGTCAAGA TTTTTAATGG CTGTTGGT         - #                  - #                 388                                                                      - -  - - (2) INFORMATION FOR SEQ ID NO: 13:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 58 amino - #acids                                                  (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: protein                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #13:                           - - Tyr Asp Tyr Thr Val Ala Arg Tyr Phe Met Ph - #e Ala Thr Ile Leu Phe       1               5   - #                10  - #                15                - - Gly Ile Val Gly Met Ala Ile Gly Thr Leu Il - #e Ala Phe Gln Met Ala                   20      - #            25      - #            30                    - - Tyr Pro Asn Leu Asn Tyr Leu Pro Gly Gln Ty - #r Ala Thr Phe Ser Arg               35          - #        40          - #        45                        - - Leu Arg Pro Leu His Thr Ser Gly Val Ile                                       50              - #    55                                                   - -  - - (2) INFORMATION FOR SEQ ID NO: 14:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 5 amino - #acids                                                   (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #14:                           - - Gln Asn Tyr His Phe                                                       1               5                                                               - -  - - (2) INFORMATION FOR SEQ ID NO: 15:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 5 amino - #acids                                                   (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #15:                           - - Glu Lys Met Tyr Asn                                                       1               5                                                               - -  - - (2) INFORMATION FOR SEQ ID NO: 16:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 11 amino - #acids                                                  (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #16:                           - - Leu Thr Lys Leu Ser Phe Leu Arg Lys Asn Va - #l                           1               5   - #                10                                       - -  - - (2) INFORMATION FOR SEQ ID NO: 17:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 102 amino - #acids                                                 (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #17:                           - - Leu Ile Phe Tyr Asn Leu Leu Leu Leu Ser Ly - #s Ile Leu Arg Arg Lys       1               5   - #                10  - #                15                - - Ser Met His Pro Gly Asn Val Leu Asn Tyr As - #p Tyr Thr Val Ala Arg                   20      - #            25      - #            30                    - - Tyr Phe Met Phe Ala Thr Ile Leu Phe Gly Il - #e Val Gly Met Ala Ile               35          - #        40          - #        45                        - - Gly Thr Leu Ile Ala Phe Gln Met Ala Tyr Pr - #o Asn Leu Asn Tyr Leu           50              - #    55              - #    60                            - - Pro Gly Gln Tyr Ala Thr Phe Ser Arg Leu Ar - #g Pro Leu His Thr Ser       65                  - #70                  - #75                  - #80         - - Gly Val Ile Phe Gly Phe Met Leu Ser Gly Il - #e Trp Ala Thr Val Leu                       85  - #                90  - #                95                - - Tyr Arg Ser Ala Cys Ser                                                               100                                                                 - -  - - (2) INFORMATION FOR SEQ ID NO: 18:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 4 amino - #acids                                                   (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #18:                           - - Ser Glu Tyr Gly                                                            1                                                                              - -  - - (2) INFORMATION FOR SEQ ID NO: 19:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 8 amino - #acids                                                   (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #19:                           - - Val Lys Ile Phe Asn Gly Cys Trp                                           1               5                                                             __________________________________________________________________________ 

We claim:
 1. A method of testing for the presence of Campylobacter in a clinical, environmental or food sample comprising the steps of:performing polymerase chain reaction (PCR) using primers adapted to amplify a region of at least 72 base pairs from SEQ ID NO:1, wherein the formation of PCR product is correlated with presence of Campylobacter; and determining if any PCR product is formed.
 2. A method according to claim 1, wherein the primers comprise at least 12 nucleotides.
 3. A method according to claim 2, wherein the primers comprise at least 12 nucleotides.
 4. A method according to claim 2, wherein the primers consist of at least 12 nucleotides selected from the group consisting of:(a) SEQ ID NO:2 and SEQ ID NO:3, and (b) SEQ ID NO:4 and SEQ ID NO:5.
 5. A method according to claim 1, wherein the temperature of the PCR is sufficiently high to prevent the primers annealing with non-Campylobacter DNA.
 6. A method according to claim 5, wherein the PCR temperature is at least 40° C.
 7. A method according to claim 6, wherein the PCR temperature is at least 45° C.
 8. A method according to claim 7, wherein the PCR temperature is 48°-52° C.
 9. A method of distinguishing between Campylobacter species jejuni, coli, upsaliensis and lari in a DNA containing sample by performing PCR utilizing primers capable of amplifying a selected Campylobacter DNA sequence comprising at least 72 base pairs, from SEQ ID NO:1, said sequence having restriction endonuclease sites specifically associated with the different Campylobacter species, obtaining PCR product and then testing for digestion of the PCR product by each of the restriction endonucleases Alu I, Dra I and Dde I, wherein the selected Campylobacter sequence is differentially cleaved by said restriction endonucleases.
 10. A method of distinguishing between Campylobacter species jejuni, coli and upsaliensis comprising the steps of:performing polymerase chain reaction (PCR) using primers adapted to amplify a region of SEQ ID NO:1 that comprises nucleotides 124-196, or using primers adapted to amplify a region of Campylobacter DNA corresponding thereto; and testing the PCR product for digestion by restriction endonucleases Alu I, Dra I and Dde I.
 11. A method according to claim 9, wherein Campylobacter jejuni DNA is characterised by cleavage by all three endonucleases, coli DNA is characterised by lack of cleavage by Dra I endonuclease, upsaliensis DNA is characterised by lack of cleavage by Alu I and Dra I endonucleases and lari DNA is characterised by cleavage by Alu I endonuclease only.
 12. A method according to claim 9, wherein the primers are selected from the group consisting of SEQ ID NOs: 2, 3, 4 and
 5. 13. Use of restriction endonucleases Alu I, Dra I and Dde I in differentiating between Campylobacter species jejuni, coli, upsaliensis and lari by testing for the digestion of a nucleotide sequence comprising SEQ ID NO:1, wherein said nucleotide sequence is differentially cleaved by said restriction endonucleases.
 14. A PCR primer consisting of the sequence of SEQ ID NO:2.
 15. A PCR primer consisting of the sequence of SEQ ID NO:3.
 16. A PCR primer consisting of the sequence of SEQ ID NO:4.
 17. A PCR primer consisting of the sequence of SEQ ID NO:5.
 18. A PCR primer consisting of a sequence selected from the group consisting of SEQ ID NOs:6, 7, 9 and
 10. 19. A kit for detesting Campylobacter comprising a PCR primer according to any one of claims 14-18.
 20. A kit for determining Campylobacter species comprising (a) restrictions endonucleases Alu I, Dra I and Dde I, and (b) a PCR primer consisting of a sequence selected from the group consisting of SEQ ID NOs: 2-7, 9, and
 10. 21. A method according to claim 10, wherein Campylobacter jejuni DNA is characterised by cleavage by all three endonucleases, coli DNA is characterised by lack of cleavage by Dra I endonuclease, upsaliensis DNA is characterised by lack of cleavage by Alu I and Dra I endonucleases and lari DNA is characterised by cleavage by Alu I endonuclease only.
 22. A method of distinguishing between Campylobacter species, jejuni, coli, upsaliensis and lari in a DNA-containing sample by performing PCR utilizing primers capable of amplifying a selected Campylobacter DNA sequence, said sequence comprising restriction endonuclease sites associated specifically with said Campylobacter species, obtaining a PCR product and then testing for digestion of the PCR product by each of the restriction endonucleases AluI, DraI and DdeI, wherein said selected Campylobacter DNA sequence is differentially cleaved by said restriction endonucleases.
 23. A method according to claim 22, wherein Campylobacter jejuni DNA is characterised by cleavage by all three endonucleases, coli DNA is characterised by lack of cleavage by DraI endonuclease, upsaliensis DNA is characterised by cleavage by DdeI endonuclease only, and lari DNA is characterised by cleavage by AluI endonuclease only.
 24. A method of testing for the presence of Campylobacter in a clinical, environmental or food sample, comprising performing PCR using primers adapted to amplify a sequence that is essentially homologous to SEQ ID NO:1 or a fragment thereof comprising at least 72 nucleotides, wherein the formation of PCR product is correlated with presence of Campylobacter, and determining if any PCR product is formed. 